Other projects

This page lists some smaller things I have built, with a particular focus on those that are not included in publications.

FlowAlign

Python package / CLI tool for easy alignment of viral sequences to reference (using minimap2 under the hood)

A tool for exploring spatiotemporal changes in lineages

Automatically generate citations from free text with GPT-3

A small tool to look up nucleotides from codon positions for SARS-CoV-2 and vice-versa

The library used to select SARS-CoV-2 samples for sequencing in the United Kingdom

Lightweight microbial genome browser

A calculator for concentrations of laboratory solutions

A visualisation of the ever expanding number of bases in the sequence read archive

A tool for communicating science using just 1,000 words

Sci-comm, often through multimedia