Other projects

This page lists some smaller things I have built, with a particular focus on those that are not included in publications.

FlowAlign

Python package / CLI tool for easy alignment of viral sequences to reference (using minimap2 under the hood)

Covince

A tool for exploring spatiotemporal changes in lineages

CiteAnything

Automatically generate citations from free text with GPT-3

Codon2Nucleotide

A small tool to look up nucleotides from codon positions for SARS-CoV-2 and vice-versa

EvenSampling

The library used to select SARS-CoV-2 samples for sequencing in the United Kingdom

Gensplore

Lightweight microbial genome browser

Mixology

A calculator for concentrations of laboratory solutions

SRAstats

A visualisation of the ever expanding number of bases in the sequence read archive

The Up-Goer Five Text Editor

A tool for communicating science using just 1,000 words

(Social) media

Sci-comm, often through multimedia